Scaffold Ga0138258_1571460

Overview

Basic Information

• Taxon OID: 3300012413
• Scaffold ID: Ga0138258_1571460
• Source Dataset Name: Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA6.ICE_1m.20151110 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location

• Location Name: Antarctica
• Coordinates
  • Lat. (^o): -64.7711
  • Long. (^o): -64.056

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000568	Metatranscriptome	1019	Y
F001615	Metatranscriptome	662	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138258_15714602	F000568	N/A	MTKDLADATADENKGKASFESLVAAKKKEIDALTKEVESKTRRIGEFGVKLAEQENDLEDTKEGLAEHTKFLADLDKNCALKQAEWEEYQKMAAMEAVALADTIKILNDDDALELFKKTLPASASSFMQVTVTSGAMRQQALSLLKSHHKKDPRLDLIEMAMHGRKMGFGKIIKMIDNLVTDLTAEQGVDEDKKVYCLAELDKA*
Ga0138258_15714603	F001615	N/A	WLKHLILGTLSLPQPVVIIVAAKMAKMLLALVLLGVVTNAGAVEAQSGMSVNPIRKVVTMLQNMQKKIASEGAKIEKMFDQYMCYCKNADETLGKSISDAETKIPQLESAIKEASALKKQLKADLKDAQKARVEAKDAIAEATAIREREAKAYNKVASDANANIGALSKAIPAIEKGMGRAFLQTGGAAVLRQMSVSADMIPADRDLLAAFLSEGGSYAPKSGEIVGILKTLHD*