Scaffold Ga0137369

Basic Information
Taxon OID	3300012355 Open in IMG/M
Scaffold ID	Ga0137369_10007580 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012355 Open in IMG/M

Scaffold ID

Ga0137369_10007580 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10891
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10891

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.5673	Long. (^o)	-123.4758	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.5673

Long. (^o)

-123.4758

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F006450	Metagenome	373	Y
F076354	Metagenome	118	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0137369_100075804	F076354	GGA	VRNADYDATMEMMTADGTEDAETQKSDIDIGRRALGIQKEVAAQQVFDFRLVREVYKELREAGWERTLKAGK*
Ga0137369_100075806	F006450	GAGG	MASSNKITLERIDHGVLPSNDLGRGFRFWSAFMGARIGFHANLNLRGLNREVPMIVFFAVANHHGFGLALQDFRLSPTPARRLEGIVWGFEVAADDLTAAADEAEKQKLRWERFADYPASSPIKESLFVLDPDGNTVELCIRRQPSDFAPQQATIPLRRISHVRVEVTDLDQAHSWYCDTFGLAEADQVPGENQLTLTVTKSGQFVILRKVEQLAERSTRCFKGPHIDLRSSEACYPEILRRFDRKETYWGPDPDLIPWHEPDPNTAYGYDPFGNRIQIGVVAKRPMHFGEVTRFANRADS*
Ga0137369_100075808	F004237	N/A	METDAVDDDNQLTDKRHTRSRHADEGDAMTTMYQVADMMIGVRNMIEAADLRRGDQVLLLADTRSDKTTLEALTAGLRFFGAEPMTLVTEPIARYGAVPGAVLDAMHASDVVIWVWPVFITFTPAHRAMGRKREESGTQLREERLKPYHIYFEGNSGLLARDYARFPNKVLWKLADKVREVVGAGKVVRLEDSLGTNLTATYDGKRLYGMQFRAGDPPGRCHFPWGRCGVFNGDGQADGEVYLTCVQGVPGKLAEPMRWKVKDSLITEVDGGGEVGEECRRLFQEVPESNRLIEIMFGYHPKASAQHGINDPMHWELISKMPWAGLGTPCKHPNFRHMDGSVFNARLYIDDRLVVDTHGMLDRSLLHHPEVLEAASEFGDPYKVLAPVSHEAHGSGSTW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137369_10007580

Overview

Ecosystem & Geography

Associated Families

Sequences