Scaffold Ga0137366_10011011

Overview

Basic Information

• Taxon OID: 3300012354
• Scaffold ID: Ga0137366_10011011
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7128
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137366_100110115	F020887	GGAGG	MRTKITFYGEIAGNIWMPDVECTKAFHVELTRIPRTSTTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCSITSARLEVSHYFGDETDGTRTVKIRTRVWELRGHGQDADCFAEVGS*
Ga0137366_100110117	F013913	N/A	MNLTPSTKGSFIAGIGLWCLIWAALFKADEIAEAGGFQRWVSSEKCLSWIRQHKSTSLISTEILNYSHTGLDPLGVTFALGGTLVNVLVIYFLLPMLDRAKRVGTALKLEL*
Ga0137366_100110118	F025336	GGAGG	MALIALIAAAEAMLYSASGAKRNQARRQQLLMGNGMDSVRTLPLVDEYLKRKTARASRLQMFVASKVAEICRRAVHTRSFEYLVLHLIRTAILKCRRKLSISHFGVTL*
Ga0137366_100110119	F014639	AGGAG	MSETAQSTNNPVSIETGFLNRKWKAIRFFFAKRAFESKLEGILRAAAGHEGNSLPAGNSQYQLLSTEADSLCTDFANRWGLDIDLLKARISGLAKLERMSVPPETINYARLACLGMVAIPLALFLIGAMAGLVSVGFHLVGGR*