Scaffold Ga0157138_1074230

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157138_1074230

Scaffold Ga0157138_1074230

Overview

Basic Information
Taxon OID	3300012352 Open in IMG/M
Scaffold ID	Ga0157138_1074230 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	533
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Fraserville, Ontario
Coordinates	Lat. (^o)	44.16961	Long. (^o)	-78.4089	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079653	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_10742301	F079653	N/A	HMTPTIEPKFICAIDDNTMILCEKHSKAFEIAAMTAMTPHTVYQLDDEDAEHMPCHACNLQDELTRPRIILPGEFI*

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