Scaffold Ga0157138_1000075

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000075
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27144
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011078	Metagenome / Metatranscriptome	295	N
F015974	Metagenome / Metatranscriptome	250	N
F025506	Metagenome / Metatranscriptome	201	Y
F031025	Metagenome / Metatranscriptome	183	N
F037638	Metagenome / Metatranscriptome	167	N
F058796	Metagenome / Metatranscriptome	134	N
F059763	Metagenome / Metatranscriptome	133	N
F070031	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100007511	F070031	N/A	MKIIDRRRDEQLGTKAKGLPMYKEFIQLVEKDKRVQSYYNMKDMLLDAFKWDKTPQGHEYWQSVYDSIVIADHPKCPQCNTIGKVKLLKTVNKHKCNKCKIIF*
Ga0157138_100007514	F011078	N/A	LELSKADWLRKATKNIAKNNELARELYQFYFLTILEKPDEQIEKIYRDGYIQFWSIRLLYLCINGNRHPFGESRIYDQHDVYELDFAEEIDLLDEREQAEGIELERINKINQVTESAYFYERELFKLWCSGMSARAIHRKTDISVREVLRVIKLMKERCITK*
Ga0157138_100007515	F059763	N/A	MYNEIIGIACLAIIIVNFGKPADLLKRYLYGSDYSKWKRMKPLDCAFCLSWWLGLSFFLYTYGWVGILYASIATVIVALLETKL*
Ga0157138_100007516	F037638	N/A	MSNIEFILSLQPLYDNWKKTQVFNPTPEQGAILNNVHREIFGRNLPNCSTCVTEALHSLLIWANQQQEAITKAQLADDEQKPKRRRKNEQ*
Ga0157138_100007527	F015974	N/A	MNWNNITIHQLQEIHSCRDMSNIERTMNILAIVNHWSMDKVESMPIDDLTREFKKLEFLNELPNRPVQFMFKHKGRYFRLAKTPNEICGHHFIELQQVFNGDTIESLHKIMALLAYEVDFFGKSKTIKDAQAHYQDKCNLFLSMEVPLPYSYSLFFSAVYPELLKTIQSYLIKEMDKLNKEITQVR*
Ga0157138_100007528	F031025	GAG	VALSITQQPNSYHPAFNDTNFVITESSGGIYTKDNFKFIADVKVASTTVAKLKAPIYFGSTNKGVFNIGRILESYVTNNWEFTDSSPSGCVNSFTDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNASLNPFDLVSYAEGQYLATSTSAKFLTNVRTRTIHRTQKDWLYCLKGDATSVLITYSDASTQTFSLPSSKVVRIPIGSQLTIPGAATYFDVVLKAGGTSKSETYRFNIKDECSKYETTDIFFMNRLGGFESFRFNMVRRDNFEVTRKQFQQNPYTLGATYGYQTSARTRTNYHTETSQKIKLFSNWINDTESVWLKDLIESPVVYMYDGTLYAVNIDNANYEQKKTVQDRMFNLELDITLSFADKSQRI*
Ga0157138_100007533	F058796	N/A	MNTKEVLTEIRSLLGFSDDAPEVSVELATAVLTDGSTIEWEGELVVGTAIFVQTAEGSIPAPDATHEVEGGLLVTTVDGIVTEIVEPEIEIEIEAKEEFATVSHFNDVVSKLESAIAELSAKVVALSASNTQHKEAMSKAIDLIEKVADLPSETPIKTPVSNKKNDQFEALKKFKNAINK
Ga0157138_100007541	F025506	N/A	MKNFNDTTASIATAVSGSSAFITFAQIYQPLVTFGVGILGIISGVLAVIYWAKKINRIDGK*