Scaffold Ga0137372_10415967

Overview

Basic Information

• Taxon OID: 3300012350
• Scaffold ID: Ga0137372_10415967
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1015
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F025713	Metagenome / Metatranscriptome	200	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137372_104159671	F065748	N/A	TLKAHVQEYPGCQKLEAFVLLEDNGDVVMHCYSIWDTPEQLEAFLERGYTVERMLRDVAGIDPERARIMEKVF*
Ga0137372_104159672	F000280	AGAAGG	MADEPQERGSARPLAGYRDTGEDIRYSRRAVNRTWVIIAVLMALYVGWTLVIYFLEPGLR
Ga0137372_104159673	F025713	GAGG	MWVQHLSSLQFLTYVAFFGVIVAAICKFVPGRAAPVREKPYPDEELHAHDAKTAKYFVAGGLFLVLGSVHMALKNLPWLAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWLALPRIVGRPLASEGLAQCAFWFTAIGLAVFYVSLVGNGIAMGSLMEHGWTYPAAKAHMGDWY*