Scaffold Ga0157140_10002674

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10002674
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1991
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_100026741	F001733	N/A	VVVIVAFVASFTSVFGDGIRTAQAQDFAELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVDANSLKVGK*
Ga0157140_100026742	F012219	AGGTGG	MTLQNFRIEKEPAPSTDWRVFGDIEDDNGNVLGTFGVDGTSVNVWWVTQDDAFQNGIVQQFALIMAQQIISGDAE*