Scaffold Ga0157140_10000393

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10000393
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5369
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F043935	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_100003932	F002398	AGGAG	MIPLMLFTLINLDPIKNFVSLKTYISENAKIHCYVYFINEDIPDFPRVNIIEKSRGDFFEYLDTIGIEHTNVGSYYFFKKKQK*
Ga0157140_100003934	F043935	N/A	MTNKELKILDEQIQYLCNQYQDRIKDIRQVTGINTSYTFLREAETIEYLYKCVLENRKHEKSNYFSCGTSGWHLIYLRNKKTYKKGEKFVIKIYFSFVEADTYE*