Scaffold Ga0157140_10000042

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10000042
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25350
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F030356	Metagenome	185	Y
F066604	Metagenome / Metatranscriptome	126	Y
F079653	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000004211	F079653	GGA	MTQINKIDSRFICAIEDNTMILCENHAKAFELAAFAAQTPHTIYEMEDEDAEDMPCHACNLQDELTRPRIILEH*
Ga0157140_1000004213	F030356	AGG	MLDIKQIPVSDINQNSKINATFVRMKNQMDVKMASYLRYLGTKNAVNRATDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFEFVAENEEDEYAARQATNMVSKVVNNMNDPHFILERWIMDANMHKNGMMMIKPVREQITRYIDTEGTIDQLKAFELQAAESGLTALRQSRRRTTVDMMKVMEEVKMNLGENQMSFAEDIIGKTVESFNQLPDDMEQPLGGDEEMLMAEYTGSQRDILDEAIKRNTIYKAKYKLTGYAINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAIELYPGIDLEKFRVHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNRYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSVGESVIPMQEYNTAAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGEAAIFILDSKFNPATDVYPMPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPSDVFNPEVMAAGNSGIKLQLALTPNQIIQDNTIRNSAEGLKEAIWLIWRTLIQYGDDYGVKKLAQAAHPDKKAEFLDFLAWDDMNFCDRKQIHLELAIGMMSEENALGRLQIIQKCQNDLYATITQMVGQGTLTPEVYKKVKKPFEDTLYVLGVKDCNSYLPSDEEVVAMIEAGKSAQASKEPSPEDKKDMSQAALNDAKIKQIMAEMTGQDAETKLDMAALMQGKPKVYS*
Ga0157140_1000004214	F015856	AGGA	MINEDSVEHFNSRLTYDLSQISKLTTAQQDRVRHYGSQAEALLKDKTFAMFVHHFKFSVADELCNMRGHQPEDNTRRVALSNELVGIDNFVSSLKRAVYYKSRLGNTNEVPNNE*
Ga0157140_1000004217	F001299	N/A	MNYNQPEYLDDTDPEKDLNYYRQDNGGMITNHNGMADKLLQNDALYNKMKGDWTRTDTNKSGNIIVTTGREDGKFYIKREQQNIEEIKARVKNYRHAAEQGIPDPMAPIGDDGKLTYKWMELPSVVAIRISDQYFDGIPWSALKNDRTLKAQFYRVVETEYPQYVCYPGGKLPIPVHVAYPTKKGEQKYFKGN*
Ga0157140_100000424	F066604	AGG	MEKDKTISATEPKARGGKREGAGRKKGSKDQVSIKNLLESLYSKTNGKHYEDLLIADFLDARERKDQQLIMKYHQLILQKVMTSLNRIEVTEGEDVIAAKKLAFADALSKLTQVIKD*
Ga0157140_100000428	F012328	AGGA	MKKSTPASTDNVWDESPEAPEGTPAAATIKTTAVATPTQPKSTSNAEYDIDGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGEEVDPKFVGSDNPYIDRTELVPVEDLKDPPARDKNLPERTQVQNLFISNTIPHTDYESRMQDKKVSVIFRKYKTGEISYEILGPVDKRPHGTKLDKYGRERPEIIKWVDPRSGEQTVVRNDGTLTPQGRKLRALMQTFRVNNSNQWDVWVDREFVSLTDNVLQNVWDLDK*