Scaffold Ga0157140_10000022

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10000022
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35939
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (77.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F026827	Metagenome / Metatranscriptome	196	Y
F030356	Metagenome	185	Y
F079653	Metagenome	115	Y
F100336	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000002214	F026827	AGGA	MSNPMSKPINQKRGPTVGNTATGSKRADFMKAKSTTNSERATIANMITGALEMRGRGQAGTVNPALEGLHSTTGKPANPTANGSKLPAKYKK*
Ga0157140_1000002215	F012328	AGGA	MSKKLSPPSTAQVENPWDESAPTEITADEIMAVAEQVAATAPKSTSNADFDMEGLMTDFPTAKDLERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQEVDPKFIGGDNPYIDKTELVPVEDLKEKPARDKNLPELSQVQNIFVSNQIPHTDFESRMQDKKVSVYFRKYKSGEISYEVVGPIDQRPFGVKLDKYGRERPEIIKWVDPRTGEQTIVRDDGTLTPQGRKLRALMQSFKVNNSNQWDTWIDRDFITLGGNNITDVWDLSK*
Ga0157140_1000002216	F100336	GAG	MTTARDSEIRRATEAAKVSDTLILQKINASHRVAFAEKFPGQIEHILRLLTERLQSGLDKRDGVEVDNPDTWKMTCKELSDLSTAIHHVYIVKEKLKDVQSNT*
Ga0157140_1000002219	F079653	GGA	MTPTIEPKFICAIEDNTMILCEKHSKAFEIAALTAMTPHTVYELDEEDSEHMPCHACNLQDEMTRPKIILPN*
Ga0157140_1000002221	F030356	AGG	MLDIKNIPVQNINKNKKINDTFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFEFVPDGEWDEEAARQATNMVSKVVNQMNDPHFILERWVMDACMHKNGMMMIKPVREFVTRYVETQGTNEQLRAFELQAAESGLTTLRQNKRQLTVEMDKAMAEIQQLLGDQQKGLANELLDKHIDSLRSSDDEENYATLAQGQAEVLASQVTGQEEIINAAITRNTIYKAKYKVTGYGLNIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAVDLYPDLQGDLENFRQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYATSAARAEIQLGLLTATPRIGVKPDKLDFEMLQDGEAAIFILDSKFDPAKDVYQIPPPSGNLAFLEQSMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGVKLQMALTPNQIIQDNTVRNAAEGLKEALYLVWRTLIQYGDDFGVKKIAAQCHPDKTPVFLDYKSWDDMTSMTDRKQLTLELALGMQSEENALNRLQIIQKSQTGLYQTVQAMVAQGTMTPEIYKKIKKPYADTLYTLGVKDCDTYLPSDDEIQQMIAQAQQSQEGKQPSPADQKDLSVAKLNEVKAQQIAAEVAGEDAESQLDFMAMAMGDPKVYS*
Ga0157140_1000002222	F015856	N/A	MIDNNTVDFYNSRLTVDLSQPSKLTTSQKDQVKHYGSLAEALLKNKDLAMFVHHFKFSVADELASIRSHQQDDNTRRIALTNELAGIDNFVNSLKRAVYLKNRIVSAEKAPDA*
Ga0157140_1000002226	F001299	N/A	MSNNQPEYLDNSDPEKDLNYYRQDNGGMITSHNGVADKLLQNDDLYRSMKGDWTRTNTNKSGNIIVTTGREDGKFYIKREQQNTEAIKQAVRNYRAAAEAGVPDPLAPIGEDGKLTFKWMDLPQVIAIRISDQYFDGIPWNALKNDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVAVPYPTKKGEKKYFRGH*