Scaffold Ga0157142_1000979

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000979
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7673
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018683	Metagenome / Metatranscriptome	233	Y
F024060	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_10009792	F018683	GGAG	MTIKRFKQTQRFRVIVGQACFYATAKDIRFGVGDFGKCNAAVQKALDTLELWRSGTDVLACSTGLAGTWEGLAVQLNVA*
Ga0157142_10009793	F024060	AGGAG	MIKQFVQVSAHKDSNNFAHLSNLSLMANSNMTAEQAQTYLNIMADVYADNGYAIEWIREDFDAAYEEMYGDLFA*