Scaffold Ga0157142_1000019

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000019
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101641
• Total Scaffold Genes: 179
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 115 (64.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F004727	Metagenome / Metatranscriptome	426	Y
F015601	Metagenome / Metatranscriptome	253	Y
F032284	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_1000019117	F004133	AGGAG	MKYTKEIIDRMVADYKAQVPVGDIARQLDLPERSIIAKLSSLGVYQKKTYLNKRGEVPVRKAEHIERIATLLDCDLELLESLEKVNKVVLKLIESRLSVPNPDPKST*
Ga0157142_1000019156	F015601	GGAG	MAGYSRDFLIGAFMSRYIHCTKITIEQLVRLEQMANDLYDRVGRDSFRSYASLDADAIRVYKNTVD*
Ga0157142_100001932	F004727	GAG	MEEVVKQAVHNYGKAAQVEITPESTMAYDHIYFGLQQLITHEQLSLLYDSGASYQQDIKKLRDEVMYKVTEIVDQVLIDNESKVG*
Ga0157142_100001986	F032284	N/A	MTKDSYFEMCEMMNMPVIESEIPVDFEDFPLELQQAFGVYRMLRDEWDTMNGHYLGKSLIGIKDLLEATEVEPQEQKFVTMLVRMIDDVRSNEINKLKAQEPAK*