Scaffold Ga0157141_1000809

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000809
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8132
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002028	Metagenome / Metatranscriptome	602	Y
F012339	Metagenome / Metatranscriptome	281	Y
F018925	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100080910	F012339	GGAG	MTKKLNESVLTNPPVMNPHSPANNGYKQQPVNIPGVLDQTRQLFQPVIAIPPQDNK*
Ga0157141_100080912	F002028	N/A	DAEQRALKKDYATGPYDHAVLKNAYRSDFTIAGGKTPPAKTTNELQQGDKSPMTNIKRQPKPATGRNPRG*
Ga0157141_10008099	F018925	AGGA	MAANVYTSLANATVYTDKLQVSTGNTAVTLQVYAVALGTAAAAGNIYSAPISIPANTVFETYSGAGNKVTITGSNWTALELGTASSATAGVIGAGS*