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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012346 Open in IMG/M |
| Scaffold ID | Ga0157141_1000419 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Emily Creek, Ontario, Canada - S29 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12977 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (48.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kawartha Lake, Ontario | |||||||
| Coordinates | Lat. (o) | 44.46181 | Long. (o) | -78.6228 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004790 | Metagenome / Metatranscriptome | 423 | Y |
| F014261 | Metagenome | 264 | Y |
| F016960 | Metagenome / Metatranscriptome | 243 | Y |
| F026860 | Metagenome | 196 | Y |
| F101160 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157141_10004191 | F016960 | N/A | RLDRDVFARHFANWCPVMKHADQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTIYVATAGVCPANDEELDSIAEIRASHLFDQEYIFKPNARNQIMSEGRALAKSWRL* |
| Ga0157141_100041910 | F101160 | GGA | MTTPYNPRSGIGELHDLIDKFVPVREAALQEHYMKAAETRALLKKLGCWPTDKRKPVEPRGKKPRNGKLASELGREAYHWAFKNNATYTEAAERFRVDANSIHSYRQYRKLPKLRTK* |
| Ga0157141_10004192 | F004790 | GAG | METLNPETLAWANKVGLSPDRVAFLLACPKFTRTGRNDKPAYIKAENPNHHLQKLGDCYWFRLRRRGKDIVENIASDLETARKRRDEMLAAFDAGKPIPYINVR* |
| Ga0157141_100041920 | F014261 | N/A | MKALIALTFIVIFGWLAVVTFCGPELARAINGPEPVKAKDTRHLSR* |
| Ga0157141_10004195 | F026860 | GGA | MRRFDPLALIKALRSEGDIPAPKGWFTVEQIRVELAMAHTRNASSRALDLFRRGLLERQPHQFKAKTGQCHQAYVYRPVPPYKSIKQAAEQMFVHRAEKVPKGWVRLVDYAVGLGVSDVALRTRVSRAGLKPKYWKTPRGIIGLHLNAFYKKSELDRLYKA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |