Scaffold Ga0157141_1000215

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000215
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22712
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F003408	Metagenome / Metatranscriptome	488	Y
F023361	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100021513	F003408	AGAAG	MPEVIQTFKAMQKTEEDKRRFLASLQGINLDEGKGQEEKTFDDVRRKALGINADANDVVSLQGSFASEAGFGVGAGLGYIEVHG*
Ga0157141_100021514	F023361	N/A	MEVMEKFSSAETEAQTLSVLMDACAISLESQLPDLVADRDKLEDSLDLPTIYRILKVCGGIDLENPNLVAAALEAAGQI*
Ga0157141_100021518	F001229	N/A	MSSLITSMLPMKLDVYRQSDAQDENTGAIKKEWHFYKTLDCHAKGVISNSATTRSGDNQIFSNKYTNEQMIQVRTIDKLTLREKVSNIRNSENIVLWTELDYPTDTPTVFELVGTTPITDPFGKVIGYNSTLKRSENQVIGF*