Scaffold Ga0157139_1000019

Overview

Basic Information

• Taxon OID: 3300012345
• Scaffold ID: Ga0157139_1000019
• Source Dataset Name: Freshwater microbial communities from Burnt River, Ontario, Canada - S22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7076
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.74057
  • Long. (^o): -78.6591

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F023350	Metagenome / Metatranscriptome	210	N
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157139_100001910	F071250	N/A	MKKLVTLEKRVENLLKKYKFLRNNNKALCVKVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKQHNVELRGTNHDDNKKKEQLIKSLLKK*
Ga0157139_100001912	F045753	N/A	MYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVDETQHLVFIDDLDNMYTINLRGRFFRSDEPEFDLDFVTLEKDGITFSFDVNIFDDHI*
Ga0157139_100001918	F023350	N/A	VTLDQYIEGNYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRK
Ga0157139_10000194	F012871	AGG	MYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEQESKQLKEKEMAVNDDSWRRMLAEDIHNYKQGKYTVIEIRAVSLIRWLEESKQITADTFTDDEYKLCKAKARKTIYFEQNLNKPMVERMSDRKRQLLKESISFEGFRELYKLYLSKQ*
Ga0157139_10000198	F049635	N/A	MNKAIYKTPFGRLVKINFKTMKNFKTALRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTILINEEND*