Scaffold Ga0157139

Basic Information
Taxon OID	3300012345 Open in IMG/M
Scaffold ID	Ga0157139_1000015 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Burnt River, Ontario, Canada - S22
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012345 Open in IMG/M

Scaffold ID

Ga0157139_1000015 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Burnt River, Ontario, Canada - S22

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9925
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9925

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Kawartha Lakes, Ontario
Coordinates	Lat. (^o)	44.74057	Long. (^o)	-78.6591	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Kawartha Lakes, Ontario

Coordinates

Lat. (^o)

44.74057

Long. (^o)

-78.6591

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F041764	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157139_10000152	F041764	AGG	MNIETGGFLKLELFNDDANLFLLALTKITNEGGKMGFKTYGLNEQEVKVLNDILDSLG*
Ga0157139_10000156	F028175	N/A	MAITINDQPYEYTPIGQRLMIVASSTNVANAGFRFVFDFGSFQVNVQPNASSKGMLDLAPIFRESLFHDASLITTTNDVEEKSVAVISCTIREGWLVDGVFTVSGSGSASIDNVYAFLAEYQVSDGYKPNPNVRYALDGTDKYLMSERTKDTHKWLEVPAGFFSTEFVYIPTRLADYGIMYTPSATALLPDNDFDIAVFSTYDENSTLIDSVKVDLSDEDNIVNVIGAYPSNLIGGGLDFTDVKFYTIQIGKETAFPVYTPKSRLYCFYLVPDDCRFDNVRLGWSNTCGGVDYFNFTKKSELSFNYDRKQYQKVIGSYNTSSFNFNTSDRGTTDRYVTTTKGLQINSDWISVGEFNLLQTLCRSNDVFIINDDGTMTPVLVDTQNFVIKDERYSKLYNVTMNLKYSQPVGL*
Ga0157139_10000157	F036240	AGGA	MANEQSAPNFFAVVNDMAKRFIELMQSDYRMKRKVGRNFTNAVASGTLEKSLAYRLQIKGSSINISVYAKGNASKYFLFREKGVNGTQKSQGAPYSFKRGSGSKPAKGQMSPMQKAIYDWMTIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWNAFEYAYENIWDEYEAKVVAAYEKDFTATIENQFNDIQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157139_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences