NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157139_1000002

Scaffold Ga0157139_1000002


Overview

Basic Information
Taxon OID3300012345 Open in IMG/M
Scaffold IDGa0157139_1000002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Burnt River, Ontario, Canada - S22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56235
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (18.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lakes, Ontario
CoordinatesLat. (o)44.74057Long. (o)-78.6591Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075743Metagenome118N
F090100Metagenome108N
F104777Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0157139_100000235F075743N/AMEKNDLSSVTLIKDPSIEPYFIGRDANSYTIYETVYPGTNTKGRGRKTRTKEAVKAVSFHTNFGSALSSIAKLKVEKRQVYDTIHEYITEWRRVKEEINQIVNF*
Ga0157139_100000283F104777N/AMGGNNMKKLILFLIVAVLASCSAPQKGYNYKHHSNRQQKMYKQTKRVNKGKSQLNHQCSPKKHR*
Ga0157139_100000288F090100N/AMSKSVTLSGNQELQFVTDSWEKTVTVYLFDTISDTRVTLTEFYGGRWNSKSISHLDKFFELIRVNPKIKIAMKKAFGELRAETPVSTFSTSLKCFKRRFIIKIKKLVK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.