Basic Information | |
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Taxon OID | 3300012345 Open in IMG/M |
Scaffold ID | Ga0157139_1000002 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Burnt River, Ontario, Canada - S22 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 56235 |
Total Scaffold Genes | 92 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (18.48%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Kawartha Lakes, Ontario | |||||||
Coordinates | Lat. (o) | 44.74057 | Long. (o) | -78.6591 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F075743 | Metagenome | 118 | N |
F090100 | Metagenome | 108 | N |
F104777 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157139_100000235 | F075743 | N/A | MEKNDLSSVTLIKDPSIEPYFIGRDANSYTIYETVYPGTNTKGRGRKTRTKEAVKAVSFHTNFGSALSSIAKLKVEKRQVYDTIHEYITEWRRVKEEINQIVNF* |
Ga0157139_100000283 | F104777 | N/A | MGGNNMKKLILFLIVAVLASCSAPQKGYNYKHHSNRQQKMYKQTKRVNKGKSQLNHQCSPKKHR* |
Ga0157139_100000288 | F090100 | N/A | MSKSVTLSGNQELQFVTDSWEKTVTVYLFDTISDTRVTLTEFYGGRWNSKSISHLDKFFELIRVNPKIKIAMKKAFGELRAETPVSTFSTSLKCFKRRFIIKIKKLVK* |
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