NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137370_10053872

Scaffold Ga0137370_10053872


Overview

Basic Information
Taxon OID3300012285 Open in IMG/M
Scaffold IDGa0137370_10053872 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2166
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009676Metagenome / Metatranscriptome314N
F091770Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0137370_100538721F009676AGGMPCALLGDRASGKTTFLGLLYAAQVKYGTGVQDDFRFHAPMGSLSLMSAVYEGMKDARFPSATLKEEITELGFIFGYLRKVVGKLPYYVRQQNWVRPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQQLLKSVVVVVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVAFQTYKRQEYDRLKDSGVKADAPRIYPAFVLSKFDTLRDDVLARLGLHRGFPENKRARKDYAEALLRVFVPQTLSQIRGGKIAGVSMDKAAYFLSWVRTEQHEGMEPVGQPRIVRTGFAPEGGGEP
Ga0137370_100538722F091770N/AMPHVVIVGDRESGKATFLSLLYATQVKSGSDASDAFRFHADVDSLDEISEAFEQLMSGSFPDSATKEGMRGITFHLGYRRAGRGFLSRFRSRGWDAGGSIALHFILVRDVEEEMSRFRRGSSLANADLREVLESDAVAILVDSTKLGHRPEDGTVGTMDRYDTAVESLLSSVQRSRPRGSGRPIHPIVVFSKFDSVNPKVLHEANLADAPPDVKKTGPRGAYAEALLESSLPRTIERIRARDRDASPFAKPSYFFSSIRTEAATANRGAKIRLRRTNGAGWEPDYSADEYLVLLERLWKIASDATA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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