Scaffold Ga0136591_1031470

Overview

Basic Information

• Taxon OID: 3300012267
• Scaffold ID: Ga0136591_1031470
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #767
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 932
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000656	Metagenome	956	Y
F018128	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136591_10314702	F000656	GGAGG	MKMPRNGFDSLAAAARMNTDDTSHHRERWPSLDWVWDELDELRADADEAIDHDDHAALEAERDALSEAVRLLLEPEPDMERVHAILRGVGHD*
Ga0136591_10314703	F018128	GAGG	MTDNADQSARMRDMWSAVVITAINDAIRHAAREPNKHKGRAQLWANSRNGREVISMAGIDPDKLVTDCMVAFAVKGVPLTQLRKRRPVYDADNACNA*