Scaffold Ga0136606_1023520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136606_1023520

Scaffold Ga0136606_1023520

Overview

Basic Information
Taxon OID	3300012262 Open in IMG/M
Scaffold ID	Ga0136606_1023520 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome #680
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	610
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Deep Lake
Coordinates	Lat. (^o)	-68.5602	Long. (^o)	78.1968	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F086358	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136606_10235201	F006455	N/A	MNQQIKPPAGWTEIEPEFEYQRQTFQRRRDGLVVAIEREWMSSYNVVTLPENYHQDNQTIDCIEVGAELE
Ga0136606_10235202	F086358	N/A	RTYDHPSHYAREIALKQIVTGEYKVDNYDSRLRLWDELISFTQYTVKAEYEITEPDGTCHERSHQGLYWHQSQTKLYNQRLNTLQRTNSAEVSPEEGEGGENRLNLIDLTITPESRYNGVAPMEDTEWFVYYL*

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