Basic Information | |
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Taxon OID | 3300012212 Open in IMG/M |
Scaffold ID | Ga0150985_121882246 Open in IMG/M |
Source Dataset Name | Combined assembly of Hopland grassland soil |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1762 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Hopland, California, USA | |||||||
Coordinates | Lat. (o) | 38.972988 | Long. (o) | -123.116539 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008444 | Metagenome | 333 | Y |
F010880 | Metagenome | 298 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0150985_1218822461 | F010880 | GAG | MSHALKKGTRSKILLVYALDAADMRSGKTGLSSRTADSSAAYIREGEAHVRRVSLVEGKPGEHRPGSFVEIDSKLLPGVYQFGVPDEMLAAGAETVTLMLKFPGAVIEPISIHLVAYDPQDADRLGMAALGPEGRRAALRGAFPRLTARELGGA* |
Ga0150985_1218822462 | F008444 | AGGAGG | MPVQHAYTMKAGTTSKLLLVHAMSAQSGSGKTGLGKNLSSGSAAYIREGDSSARRVPIVDGRVGEWGSGALAEVDPELLPGIYQFGAPDEMLAEGSARAVLLIRFPDTLIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELELGEQAEKELAAKLHAEKKS* |
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