Scaffold Ga0150985_116722390

Overview

Basic Information

• Taxon OID: 3300012212
• Scaffold ID: Ga0150985_116722390
• Source Dataset Name: Combined assembly of Hopland grassland soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1769
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006485	Metagenome / Metatranscriptome	372	Y
F012897	Metagenome / Metatranscriptome	276	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0150985_1167223901	F012897	AGGAGG	MTALTKAAFLVALPLGAAWYLWHGHRIVAAALMAAAFAFIIGTKIRSDVRRKQEEEDLRRQAKSDGRYVAAHIEGLGQPQTPTAAELPAESVAHLEEMWAQITGELKR*
Ga0150985_1167223902	F006485	AGGGGG	MDVRTVKDLCVRLDELSTILELMEGDPINVALYREASDALNQALSEIERLRSEADLHRETSHAMRDALAEIERLQSEVADLQHTKFDGGLSNLSPTLTASATDWFKKFLKRKQVLTGKIKSTESYTD*