Scaffold Ga0137377_10097296

Overview

Basic Information

• Taxon OID: 3300012211
• Scaffold ID: Ga0137377_10097296
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2784
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008941	Metagenome / Metatranscriptome	325	Y
F025961	Metagenome / Metatranscriptome	199	Y
F050267	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137377_100972963	F025961	AGG	VPDADSRERLMEERGGYLWFDGVRVFAEDMRLMCVVGGRVVPLPVVILHPDCTLASPGDVGRLGVPRRWAEQQGLCP*
Ga0137377_100972964	F050267	AGAAGG	MGWRENMSSQEFHEEFHAFANVTQRILWQGVAAVMAARISIAESRRLCDETRELLAARRDDRLFRRRPLNAH*
Ga0137377_100972965	F008941	AGCAGG	MKVVAYHDEELVQLATRIPLRTARRLKEFCMRNEVYVQSFVRRALAEKLAHMRRSA