Scaffold Ga0137379_10100491

Overview

Basic Information

• Taxon OID: 3300012209
• Scaffold ID: Ga0137379_10100491
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2782
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040038	Metagenome	162	Y
F079896	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137379_101004913	F040038	GGTGG	VSTAVRLVFPLLLLPVMAAAQGIDLSGAVTLQHADHRVDAGLGVERATGLLAGGAARLRFRSIAVALSGETGHLTAVPGSGAVDRDVAQVGATAQFTPLPWLVLESGVTLRSFGTVVARQRWTLLRAGAQARVPLSGETFWVLGHAHLLPVVRVNGLPNAATAFDAGTGLAYQRGRIVFALTYTLERCDFPSQGSTRRIEQLGTLALSGGVQLHLH*
Ga0137379_101004915	F079896	N/A	MDISVDQTAPKTFWRTWRREIVRGGVLFGLVVGAGLFIRSIRVNIPSSLGALGSFGDFNWGDGDGGDLFGRGRQKGDPWEYRALITPTQHVWIRNTNGPIEVVAGTGDSLVIQVEKSWHTSDPQSVQLIPVLTERGLTVCALWEARDRRCNEGGDYKMNGVRK