Scaffold Ga0137376_10473232

Overview

Basic Information

• Taxon OID: 3300012208
• Scaffold ID: Ga0137376_10473232
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1087
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001935	Metagenome / Metatranscriptome	615	Y
F019913	Metagenome / Metatranscriptome	227	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137376_104732321	F001935	GAGG	MWVQHLSSLEFLTYVAFFAVVVAAICRFVPGRAAPIRDEPYSDSELTRHDARLAKYVVAGGGFLVLGALHMTLKNLPWPAEWLARSGYAGHLVRDLSNTHV
Ga0137376_104732323	F090360	AGG	MAVGVAPPFVSYSSMTEAVVPASEWSYLYASLQALKAHVQEYPGCQRMEVWAALDDDGNMRLHCYTTWDTPEQLEVFLERGYTFDRLLADVGLSGIERSLTMEKLF*
Ga0137376_104732324	F019913	N/A	ETEHRVKTWYVDWLSLAWLWGFVAALAVILIFWVWQYRTTRQKTGIYAADTWSGFTSELAGPTTFFFLLLTAILTGFAVAVIVGHIVDGQVF*