Scaffold Ga0137381_10024541

Overview

Basic Information

• Taxon OID: 3300012207
• Scaffold ID: Ga0137381_10024541
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4806
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001944	Metagenome / Metatranscriptome	613	Y
F023566	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137381_100245411	F023566	N/A	VPGYPFTVNGFRFTGFTLRPEALVTFGQTTVACTDAKIIARDLHLRCYDRQLGTVTIVGKFLTRLVTSRLDAAVVSAVVTVRDATGEILYRARDSFEWHPGN*
Ga0137381_100245413	F001944	GGA	VSLVGLVIVVGTAAFTIVKVARLWTSRPESPSANVTARLEALERGFQDLQQEQAETQERLDFAERLLSKAREERQIGG*