Scaffold Ga0137380_10031927

Overview

Basic Information

• Taxon OID: 3300012206
• Scaffold ID: Ga0137380_10031927
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4855
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011832	Metagenome / Metatranscriptome	286	Y
F031298	Metagenome	183	Y
F035819	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137380_1003192711	F035819	GGAGG	MKPHLRHPKTTVPGQEHLAVRPPVDGENGAESSRLSLISLKVDPALRREIDAYAEAHGLTRSRAAGHYLAIARETLREREGIPASRADELLEALEGVRAAVDILGPPALGMLRLLAHWAVQGGGVKVSEDELLAEIRTVGADEWEQAVADA
Ga0137380_100319278	F031298	AGGGGG	MVRGLRVVFSPNPASRALYSYRVPDPGARGTVTAAWTAGGLRTYLVGPGGGLVYVRWDGDGLVCGVSMRDLKLEPGEGTASLTPVVSNLRRHSAASQF*
Ga0137380_100319279	F011832	AGGAGG	VKRHRIQPKVAVELETVTLRLPAQLVRAVEQYAKYLGGSTDRTYVITQAIEIALQQDAEFQKTLSARPAGSPAGPVRATA*