Scaffold Ga0137362_10203018

Overview

Basic Information

• Taxon OID: 3300012205
• Scaffold ID: Ga0137362_10203018
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137362_102030182	F002560	AGGAGG	MVEHNPPPHADRVPLIPLPIALYISDGLVFKLYDGGQPSRRFSIRWERLVPAKQAAPEAASDGLQTGSRAHQE*
Ga0137362_102030183	F000208	N/A	MAMRIRVTTRADSYEERKQQHIERGYRIEDERPIPVNGFCYFIAMREMPVSDTVDELVAQAINGGRGLHRDW*
Ga0137362_102030184	F007596	GAGG	MSLRIRFRFDGKCNLHPRYDPARDGRPQHSNCEGCESLYVIHLYTKIAKRRAENEHGIVVRTSSGREEQHAVDEPGQLSNTENK*