Scaffold Ga0137374_10040174

Overview

Basic Information

• Taxon OID: 3300012204
• Scaffold ID: Ga0137374_10040174
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4965
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → DHVE2 group → Aciduliprofundum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038176	Metagenome	166	N
F055584	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137374_100401743	F055584	GGAGG	MRREVLRRGIVEALFVILAGVSMGTLVVVANFADYGALLTLDFGATIIFVALATGIAIGLRLHATEPQYLVVAGFLGSLTAIVIVSLSVYAPVFAGAVPGLEALGPSDSARAVIIFASLFLIPIHIVGCVVGYALADFLAPAGLRGGREFDRV*
Ga0137374_100401744	F038176	GGTGG	MTWFSKLAAVALASLAIIGVVVWVNLLDRYIAASDVRMQFGNNVAYESVTIPAITSPEQDVRIGVQFILRNPSAIAVDIMQIAYRFYMDNLTDTRSFAEKEESIFVVTGGFFPPGIGYVLGPHSTASVWGNATVHGATQPVQLAKLNLTFGGRYFPIIDASLVYRVDGTSIVERILGIEFVTSGGIVPDAA*