Scaffold Ga0137399_10362042

Overview

Basic Information

• Taxon OID: 3300012203
• Scaffold ID: Ga0137399_10362042
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1206
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F001367	Metagenome / Metatranscriptome	713	Y
F018044	Metagenome / Metatranscriptome	237	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137399_103620421	F001367	GGA	MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDTLLVVTAVAQTDTSLQVSITDATAPPNQLPTDLLLPVKIWERPNGSTDDF
Ga0137399_103620422	F070523	AGGA	VKKDKISLLPDERVAIHAELGSVLKRGVPAEILLVIILLLALRPLSRRKAQKKKGQPKLP
Ga0137399_103620423	F000739	N/A	MNRFELWLKGILAAAVSGGAGGVLTGFAAVGIDPQHFNLQAGTGATLRIAVAAALINAVIGVAAYLQKSPLPTE*
Ga0137399_103620424	F018044	N/A	YAQTIERENGISIPALRPYPSRGEYEHCFTLESPRGEFLQLTPTIAEHIARAIECSRSSPRAKSRSRLYDREQRAERTYDQWAFDVMDDAVPAFHKQPFVTVT*