Scaffold Ga0136618_10136060

Overview

Basic Information

• Taxon OID: 3300012188
• Scaffold ID: Ga0136618_10136060
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1079
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.059
  • Long. (^o): 163.688

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016321	Metagenome / Metatranscriptome	248	Y
F093266	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136618_101360602	F016321	GAGG	VTGTNSRKTEARTRTLRWIESLWEGTSTTAREEDQKEEVLAVFRELAGESRSKGEVREYVPWKPLW*
Ga0136618_101360603	F093266	AGGA	VLDQQGEQQVEAKVETLMENLAVAAMQANNLAADSPEYGALAETVGYALDLAELGLSAESGAFDLSETPKPN*