Scaffold Ga0136557_1064580

Overview

Basic Information

• Taxon OID: 3300012178
• Scaffold ID: Ga0136557_1064580
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 887
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007407	Metagenome	351	N
F007738	Metagenome	345	Y
F033324	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136557_10645801	F007407	GGTGG	MTTRDTRKAFLKLLDDTWPGVRSEFVAAMKDVQSQADMKALESAIARGDVDAAFRALRFDAADLFKTDTAITAAMNAGGNYQMGAFQHATRRAPIASRVV
Ga0136557_10645802	F033324	AGGTGG	MTDTAKRMTDAASTEALFAAAHAAMPLEARKAELLAKMRWMHYNASIAQGFSQEDAFELCLATVEYE*
Ga0136557_10645803	F007738	N/A	EAGMSGADITADVQAAYVEAGIAVGNGTGAPIVTISRPGTPSGPEWNPTPGAPVVHTFTAKPAAKAYTQRTGLALGAGELVYSLVNIGVTIAPSTSDVLTVGGVNYPVQEVIVMDSAGYVISWLVKVAK*