Scaffold Ga0153943_1051954

Overview

Basic Information

• Taxon OID: 3300012177
• Scaffold ID: Ga0153943_1051954
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Brendan T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.8721
  • Long. (^o): -74.5205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048539	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153943_10519542	F048539	N/A	MTAAADFIAQLQQERRGGNVSGETEQHLKHEFRKLGRDASVPILSAAIGSEIDRLEREAETLRRLRDTVLGVA*