Scaffold Ga0153952_1016895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153952_1016895

Scaffold Ga0153952_1016895

Overview

Basic Information
Taxon OID	3300012176 Open in IMG/M
Scaffold ID	Ga0153952_1016895 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2028
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: New Jersey, Wharton State Forest
Coordinates	Lat. (^o)	39.746	Long. (^o)	-74.7609	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081966	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153952_10168951	F081966	N/A	TYQVECNMFFKGHMERARMDVYNLGKIELILGML*

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