Scaffold Ga0137350_1018970

Overview

Basic Information

• Taxon OID: 3300012166
• Scaffold ID: Ga0137350_1018970
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9228
  • Long. (^o): -106.9512
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011832	Metagenome / Metatranscriptome	286	Y
F031298	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137350_10189702	F031298	AGGAG	MVRGLRVMFSPNPATRALYSYRVPVAGACGTVTAVRTASGVRTFLDGPGGGLVFVRWDPDGLVCGISMRDLKLEPAEGPRHP*
Ga0137350_10189703	F011832	AGGAGG	VNRRRRIQPKAVVEHETVSLRLPAELVRAVDQHAKYLDESTDRTHVVTQALEIALAQDADFQKTLAARPAAPAAGPLRATA*