Scaffold Ga0137336_1067611

Overview

Basic Information

• Taxon OID: 3300012161
• Scaffold ID: Ga0137336_1067611
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT300_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 663
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Glomerellales → Glomerellaceae → Colletotrichum → Colletotrichum acutatum species complex → Colletotrichum lupini (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9521
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008074	Metagenome	339	Y
F019458	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137336_10676111	F019458	N/A	DIFNKLKESSMFSFNNRYLVNVFYSIMLDTRAVGVSIVGEP*
Ga0137336_10676112	F008074	N/A	IEVKVIVIFKGKLKSARGLLVYLVVIVVLYKMLNCLNLNFITCLLKNPK*