Scaffold Ga0137389_10115756

Overview

Basic Information

• Taxon OID: 3300012096
• Scaffold ID: Ga0137389_10115756
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2152
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007516	Metagenome / Metatranscriptome	349	Y
F013724	Metagenome	269	Y
F086866	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137389_101157561	F013724	N/A	RTIEYRYFDSSLDPARLQANIKLACWITKRASTLPDSAIPTERVRLGSHAGGQVTDSSDGLLRRFADTIFVRPQDKLKLYWLFQRSAWQPARRVA*
Ga0137389_101157562	F007516	AGGAGG	MYRRINPTSRQQLPMRMLFQPLGNGTFLRACEADGFRGLVAALLDDPAYESGDVETRLVNRLRLADELVLLARIENEPSLLIGDRDADLTINVASDERFIRSLDRLGLVSLEPTLSAGGTRT*
Ga0137389_101157564	F086866	N/A	MKVGWRQEDLALKARARGLRWSASTVTAIEIGRRPVSAGELLLLPTLLQVSLTELLSGDHDEVADVDGVLLTQAALGEIGRGGALTELESVFFVTPTRLEVSATDAERKAARSLSRATNSTISVRDLVATAELLWEGRRLDEERERRLNASTGKGNLARRRGHITGVLQDEILEKLTRANSTAGHKEK*