Scaffold Ga0136621_1004290

Overview

Basic Information

• Taxon OID: 3300012092
• Scaffold ID: Ga0136621_1004290
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5924
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0795
  • Long. (^o): 163.805

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026166	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136621_10042903	F026166	AGG	MPPRPERPADAEYYERERVALFSQGDLFRDVPLAYPLPAEELVFDQVEGGGRRFVSGPLTFGPAMLITPSCSMGTQGTTGYGHPVRTLAPVIPLADVVERGVVKEIALADLRRFDHLINYMYLPALEIEEIAFSMPESVALLYMPVTLHHAFVQGNRVSQLAFRGAQQLQRKLVWFYSGWLEDDLDVFDPPMD*