NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153924_1045902

Scaffold Ga0153924_1045902


Overview

Basic Information
Taxon OID3300012089 Open in IMG/M
Scaffold IDGa0153924_1045902 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.7086Long. (o)-74.664Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000488Metagenome1084Y
F070730Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0153924_10459021F000488N/ANTKTLAECLLLKKESMTEKSLLKRIGIEPTLSTKLYDRLVKADPCWHKVDDFYFASCPPELYFRKTKKLLYIKEYKELLEPTLDRISPFFTKMSENKTWAEDPQYDSL*
Ga0153924_10459022F070730N/AIMVDCSIEHLVNIVLEKERSFLMCILQYLYLSLILGHVLSAYAIFDKCIPILSTEIRKGNSSGKIVESRHIYLSN*

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