Scaffold Ga0154001_1028028

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0154001_1028028

Scaffold Ga0154001_1028028

Overview

Basic Information
Taxon OID	3300012074 Open in IMG/M
Scaffold ID	Ga0154001_1028028 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ085 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	880
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: New Jersey, Wharton State Forest
Coordinates	Lat. (^o)	39.7459	Long. (^o)	-74.761	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003922	Metagenome	461	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154001_10280283	F003922	N/A	LCPEKLGNKLKFTNTAERVRDVRRTLQPLREVWMKMGLEKLESYKGVAVKALLN

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