Scaffold Ga0136631_10000026

Overview

Basic Information

• Taxon OID: 3300012043
• Scaffold ID: Ga0136631_10000026
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37892
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.1246
  • Long. (^o): 164.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027713	Metagenome / Metatranscriptome	193	Y
F076730	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136631_1000002632	F076730	GGA	MSAAIRSVGASASLNHDGPEDPDFATVDIRLFATTDDGERVADPQPASTSVRIERTKLAALELSVQMALRLRQAPTGARLEAWQRIAAELAARGIEAEPEALHRMRFEFAPDDELRAAQQAVWPIGH*
Ga0136631_1000002643	F027713	N/A	MDHFELSERWCSWKDPDAIFSAARMAIEAGPFDPAICEVVFNEEFDPFTVDTLEEAREHLLRNPRIMSMDIILSHIDEDDARLTLRYSGERLQLNGYGRDWTRARAAYNAAQAELAGRYGITTFKLPELPKDTVAETRKRLEIEALEAALENVDWSIENR*