NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137431_1061845

Scaffold Ga0137431_1061845


Overview

Basic Information
Taxon OID3300012038 Open in IMG/M
Scaffold IDGa0137431_1061845 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8898Long. (o)-106.9078Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066900Metagenome126Y
F074537Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0137431_10618451F066900GAGMLEHRSRGDGAIGYLEGEGMEKTLRFAELRRRALGILHHLQRAGAQPGDR
Ga0137431_10618452F074537GGAGMSRVIVLHAPAPGHSSPEWERSLLQRLPYARRLELESRDRQARRASLGGTALLFEAAGRLGFDDVRSDELHFPEGAKPSVTGGPYFSISHTAHCVACAASRECDVGIDHEDFAGDEAPVRLRRWTAVEATLKAAGAGLRRAGAVEVDGDFRVSRLDDTEYHLVPLDLGPGVVACLAVSSRPDAIEIQRLGGVYL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.