Scaffold Ga0136561_1013255

Overview

Basic Information

• Taxon OID: 3300012031
• Scaffold ID: Ga0136561_1013255
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1565
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029030	Metagenome	189	Y
F066321	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136561_10132552	F066321	GGAG	MITAEDVAEQLTQARATASMSRLDFAKIAMTAGWITAAEAKAWVPGNAMPKIVTDIIAQHIEGADRQAIAEINALGQMVVNRNDLLLRLLMAVKKVTDAQMDAHFGIAR*
Ga0136561_10132553	F029030	N/A	VTRAAYILLRFAEMVISSNSRLFNAAVFGGSTYQTVSARAYIDGRTNAKWARRRDRIDWFLAWYEADHCQRAWQNEVDAARKTLGRAGATPSQPGAA*