Scaffold Ga0136609_1027633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0136609_1027633

Scaffold Ga0136609_1027633

Overview

Basic Information
Taxon OID	3300012027 Open in IMG/M
Scaffold ID	Ga0136609_1027633 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	536
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Deep Lake
Coordinates	Lat. (^o)	-68.5627	Long. (^o)	78.1882	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075514	Metagenome	118	Y
F080721	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136609_10276331	F075514	AGG	MDKFGSAIYRMNMKLGSKFLNTLRIKTHLLKMLQLVIVVDGATHSQKDGVEGNNGGS*
Ga0136609_10276332	F080721	GAGG	VLFLCGAQLVLLSSVLTVLDLDEVNVTLENAEIFGSMLSGEGGSADG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.