Scaffold Ga0136609_1007025

Overview

Basic Information

• Taxon OID: 3300012027
• Scaffold ID: Ga0136609_1007025
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep Lake
• Coordinates
  • Lat. (^o): -68.5627
  • Long. (^o): 78.1882

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015044	Metagenome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136609_10070252	F015044	AGGAG	VLGKNRIASGQEEAFSACAVSCGSNQEGSVLLAVFLRSRPCSDSLTALPTSV*