Scaffold Ga0136609_1004616

Overview

Basic Information

• Taxon OID: 3300012027
• Scaffold ID: Ga0136609_1004616
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2014
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep Lake
• Coordinates
  • Lat. (^o): -68.5627
  • Long. (^o): 78.1882

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029953	Metagenome	186	Y
F037512	Metagenome	167	Y
F050795	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136609_10046164	F029953	GAGG	MTLKQHMRFESIPQKVVERGLTELLRKYDRECQLMTANRLNRLRGGSVATPDETRALMEWSDGLIASFRDGD*
Ga0136609_10046165	F037512	GGAG	MNDYRITMLSTDPESAVQFVIYTRAATERDAVDVANQQYSPHFEVDRFAVTEIVN*
Ga0136609_10046167	F050795	AGGTGG	MKALEIPERFTGTVYICAWSNPDFCLYGETFVTDKAPNEFSECILLGQEEVDIALDRTGTLDKQVDQLRAARQKIIDKATGEAQQIQEAIESLLAIEMPEPVK*