Scaffold Ga0120159_1007457

Overview

Basic Information

• Taxon OID: 3300012014
• Scaffold ID: Ga0120159_1007457
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4937
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052960	Metagenome / Metatranscriptome	142	N
F061635	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120159_10074573	F061635	N/A	MPSNDALGTITWVPVTEEWGRGVLDQPWGGAPFTNCPDKGQTRFFLGRYGTGGKLIACTVGVDGRRLHGRYDGQGGEFRPGSFDVSIVTDPADNEQEFEGVYVEDGGITTDWCGELINSTRPDVLAPRVSALPSFGRAGKPARLRFTASDDRNLARVQLTIRRAGKILGSVTSALRRVNGQPSWLLWRPRRHLSGTFALCARAWDRYGNASARSCSTLRLK*
Ga0120159_10074574	F052960	AGCAG	MNAIMSFRIGIPGYLKAVAVLVALLVLAGCGGGSSSAKTSDVEKAILVRSPDSSQVTCMRHGSYQGKTLFRCQSDVATSVREMRPESSCYTFEHGKLDNVTRHVSC*