Scaffold Ga0153805_1055856

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153805_1055856

Scaffold Ga0153805_1055856

Overview

Basic Information
Taxon OID	3300012013 Open in IMG/M
Scaffold ID	Ga0153805_1055856 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	669
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001713	Metagenome	648	Y
F059761	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153805_10558562	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMTYETDEEGTYNENIDEVWFEGRNVMGIFTDKQFQELEIEGCMRLSKHILEEADEAKIAAYEG*
Ga0153805_10558563	F059761	AGG	MTELLKAFGWRKRQANEIVEKIRNDTLEEVALEFDRMKSFGDTSHSFASFVRGMKACPPCHNNCN

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