Scaffold Ga0153805_1014620

Overview

Basic Information

• Taxon OID: 3300012013
• Scaffold ID: Ga0153805_1014620
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1344
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F074544	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153805_10146202	F000220	AGGA	MSEGTLNANSTLDKVLGYVDSPFKLAAILVMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATVVAVFKVNPMFGTRVLYRAYAKDGRDKTNDGLDVGLFTQNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ*
Ga0153805_10146203	F074544	N/A	KKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSALWTQIVLERNSIVQRRRTQEILDARAAKNRKQEIDEAITMALCILVAAAIFFLVAWGVIAMKGKL*